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David Koslicki | Using the Earth-mover’s Distance to compare microbial communities | CGSI 2017

Date:July 20, 2017Posted By:Duke Hong
David Koslicki | Using the Earth-mover’s Distance to compare microbial communities | CGSI 2017

07/20/2017 @ 13:30-14:15
Research Talk by David Koslicki
Using the Earth-mover’s Distance to compare microbial communities
1. McClelland, J. and Koslicki, D., 2016. EMDUnifrac: Exact linear time computation of the Unifrac metric and identification of differentially abundant organisms. arXiv preprint arXiv:1611.04634.
2. Mangul, S. and Koslicki, D., 2016. Reference-free comparison of microbial communities via de Bruijn graphs. bioRxiv, p.055020.
3. Evans, S.N. and Matsen, F.A., 2012. The phylogenetic Kantorovich–Rubinstein metric for environmental sequence samples. Journal of the Royal Statistical Society: Series B (Statistical Methodology), 74(3), pp.569-592.

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Funded by NIH since 2016 – Grant GM112625

IN PARTNERSHIP WITH EDMOND J. SAFRA CENTER FOR BIOINFORMATICS:

AND THE ARTIFICIAL INTELLIGENCE/MACHINE LEARNING CONSORTIUM TO ADVANCE HEALTH EQUITY AND RESEARCHER DIVERSITY (AIM-AHEAD):

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