Over the past few decades, technological developments have resulted in the accumulation of large genomic data even within a single experiment. The analysis of this data has led to many novel discoveries and medical applications. For this reason, the majority of the biotechnology and pharmaceutical companies today, as well as many labs in academia, include experts in the analysis of biological data. These experts have domain expertise in subfields of genomics, such as cancer genomics, statistical genetics, protein structure prediction, computational medicine, metagenomics, and others.
The analysis of these datasets requires the development of methods that are domain-specific. Over the years, many communities that are dedicated to specific subfields of genomics have emerged. Unfortunately, this resulted in smaller overlap between the different sub-domains; for example, the statistical genomics community has minimal overlap with the metagenomics community. CGSI was formed in order to bridge this gap; it is a methods-oriented program with the goal to create interactions between the different fields of research in computational genomics -- and more broadly, computational medicine -- in an informal setting.
In order to achieve this goal, we structure CGSI in a very non-typical way, resulting in its own unique culture. Specifically, CGSI is a fusion of a summer school and a scientific conference. It has the characteristics of a conference, bringing together over a hundred researchers and trainees who showcase their latest research. It also has the characteristics of a summer school; it is a month-long program that involves a combination of tutorials (broader talks that include an overview of the field) and research talks, with opportunities for in-depth discussions during breaks. It emphasizes the need for interaction between participants. We offer icebreakers and many social activities, including an opening retreat in the mountains, a picnic at the beach, and sports games that involve both faculty and trainees. We hope you will join the community.
We are very proud of the faculty in the CGSI community. It is clear that everyone who joins CGSI views it as an opportunity to be part of a larger community. The vast majority of the CGSI faculty spends at least a week at CGSI, takes part in the social events, and makes an effort to interact with faculty and trainees from other fields within computational medicine in order to foster a sense of a larger methods-based community. We welcome to our community both new and established researchers who are interested in methods development for genomics and medical applications, and who would like to become part of a larger, friendly, and intellectually stimulating community.
The institute has its roots in a program called "Mathematical and Computational Approaches in High-Throughput Genomics", which was held at UCLA's Institute for Pure and Applied Mathematics (IPAM) in 2011. Many of the current CGSI faculty were part of this program. CGSI was later founded in 2015 by Eleazar Eskin (UCLA), Eran Halperin (UCLA), John Novembre (The University of Chicago), and Ben Raphael (Princeton University) with the goals of improving education and facilitating collaboration in genomics and related fields. In 2023, in response to changes to the research environment, the founders made the decision to add other areas of research to its agenda: specifically, machine learning and AI applied to medical imaging and electronic health records.
CGSI Co-Founders
Eleazar Eskin
Professor
Head of Computational Medicine Department | UCLA | @ZarEskinCompMed
Eran Halperin
Professor
Computer Science & Anesthesiology | UCLA | @eranhalperin
Ben Raphael
Professor
Computer Science | Princeton University | @Benjraphael
John Novembre
Professor
Human Genetics, Ecology & Evolution | University of Chicago | @jnovembre
CGSI Organizing Committee
CGSI 2024 program faculty (updated in March)
Ahmed Alaa | UC Berkeley & UCSF
Can Alkan | Bilkent University
Corey Arnold | University of California, Los Angeles
Lisa Bastarache | Vanderbilt University
Kayhan Batmanghelich | Boston University
Brian Browning | University of Washington
Na Cai | Helmholtz Zentrum München
Francesco Paolo Casale | Helmholtz Munich
Tim Chang | University of California, Los Angeles
Irene Chen | UC Berkeley & UCSF
Rayan Chikhi | University of Lille
Mohammed El-Kebir | University of Illinois, Urbana Champagne
Jason Ernst | University of California, Los Angeles
Eleazar Eskin | University of California, Los Angeles
Nandita Garud | University of California, Los Angeles
Casey Greene | University of Colorado
Juan Gutierrez | Department Chair of Math at UT San Antonio
Iman Hajirasouliha | Cornell University
Haky (Hae Kyung) Im | University of Chicago
Shalmali Joshi | Columbia University
Aly Azeem Khan | University of Chicago
Jaehee Kim | Cornell University
David Koslicki | Pennsylvania State University
Rahul Krishnan | University of Toronto
Smita Krishnaswamy | Yale University
Kenneth Lange | University of California, Los Angeles
Christina Leslie | Sloan Kettering Institute
Jingyi (Jessica) Li | University of California, Los Angeles
Christoph Lippert Hasso | Plattner Institute
Jian Ma | Carnegie Mellon University
Nick Mancuso | University of Southern California
Siavash Mirarab | University of California San Diego
Jazlyn Mooney | University of Southern California
Loes Olde Loohuis | University of California, Los Angeles
Pavel Pevzner | University of California, San Diego
Harold Pimentel | University of California, Los Angeles
Rajesh Ranganath | New York University
Ben Raphael | Princeton University
Sushmita Roy | University of Wisconsin-Madison
Julia Salzman | Stanford University
Kris Sankaran | University of Wisconsin – Madison
Ayellet Segre | Harvard School of Medicine
Liat Shenhav | New York University
Ritambhara Singh | Brown University
Pavel Skums | Georgia State University
Sagi Snir | University of Haifa
Daniel Tward | University of California, Los Angeles
Wei Wang | University of California, Los Angeles
Wenyi Wang | MD Anderson Cancer Center
Tandy Warnow | University of Illinois
April Wei | Cornell University
Loic Yengo | University of Queensland, Australia
Alex Zelikovsky | Georgia State University
Xinjun Zhang | University of Michigan, Ann Arbor
Zijun (Frank) Zhang | Cedars-Sinai Medical Center
Jasmine Zhou | University of California, Los Angeles