CGSI 2016 – Page 5

Date:July 19, 2016Posted By:Duke Hong

Sohini Ramachandran | Genomic Reconstructions of Deep Human History | CGSI 2016

07/19/2016 @ 14:00-14:45 Tutorial by Sohini Ramachandran Genomic Reconstructions of Deep Human History 1. Palacios, J.A., Wakeley, J. and Ramachandran, S., 2015. Bayesian nonparametric inference of population size changes from sequential genealogies. Genetics, pp.genetics-115. 2. Rasmussen, M.D., Hubisz, M.J., Gronau, I. and Siepel, A., 2014. Genome-wide inference of ancestral recombination graphs. PLoS Genet, 10(5), p.e1004342….

Date:July 19, 2016Posted By:Duke Hong

Jo Hardin | Tutorial on RNASeq Normalization and Differential Expression | CGSI 2016

07/19/2016 @ 10:00-10:45 Tutorial by Jo Hardin Tutorial on RNASeq Normalization and Differential Expression 1. Wang, Z., Gerstein, M. and Snyder, M., 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nature reviews genetics, 10(1), pp.57-63. 2. Bullard, J.H., Purdom, E., Hansen, K.D. and Dudoit, S., 2010. Evaluation of statistical methods for normalization and differential expression in…

Date:July 19, 2016Posted By:Duke Hong

Alexander Schönhuth | Snakemake: Reproducible and Scalable Data Analysis | CGSI 2016

07/19/16 @ 09:15-10:00 Tutorial by Alexander Schönhuth Snakemake: Reproducible and Scalable Data Analysis 1. Köster, J. and Rahmann, S., 2012. Snakemake—a scalable bioinformatics workflow engine. Bioinformatics, 28(19), pp.2520-2522. 2. Köster, J., 2014. Parallelization, scalability, and reproducibility in next generation sequencing analysis (Doctoral dissertation).

Date:July 18, 2016Posted By:Duke Hong

Brian Browning | An Introduction to Genotype Imputation | CGSI 2016

07/18/16 @ 09:15-10:00 Tutorial by Brian Browning An Introduction to Genotype Imputation 1. Marchini, J. and Howie, B., 2010. Genotype imputation for genome-wide association studies. Nature Reviews Genetics, 11(7), pp.499-511. 2. Howie, B., Fuchsberger, C., Stephens, M., Marchini, J. and Abecasis, G.R., 2012. Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nature…

Date:July 18, 2016Posted By:Duke Hong

Carlos Bustamante | Interpreting Human Variation in the Personal Genome Era | CGSI 2016

07/18/2016 @ 15:15-16:15 Research Talk by Carlos Bustamante Interpreting Human Variation in the Personal Genome Era 1. Shringarpure, S.S. and Bustamante, C.D., 2015. Privacy risks from genomic data-sharing beacons. The American Journal of Human Genetics, 97(5), pp.631-646. 2. Mendez, F.L., Poznik, G.D., Castellano, S. and Bustamante, C.D., 2016. The divergence of Neandertal and modern human…

Date:July 18, 2016Posted By:Duke Hong

Leonid Kruglyak | Genetic Basis of Complex Traits | CGSI 2016

07/18/2016 @ 14:00-14:45 Research Talk by Leonid Kruglyak Genetic Basis of Complex Traits 1. Sadhu, M.J., Bloom, J.S., Day, L. and Kruglyak, L., 2016. CRISPR-directed mitotic recombination enables genetic mapping without crosses. Science, 352(6289), pp.1113-1116. 2. Bloom, J.S., Kotenko, I., Sadhu, M.J., Treusch, S., Albert, F.W. and Kruglyak, L., 2015. Genetic interactions contribute less than…

Date:July 18, 2016Posted By:Duke Hong

William (Xiaoquan) Wen | Bayesian Statistics and its Application to Integrative Statistical Genomics | CGSI 2016

07/18/2016 @ 10:00-10:45 Tutorial by William (Xiaoquan) Wen Bayesian Statistics and its Application to Integrative Statistical Genomics 1. Stephens, M. and Balding, D.J., 2009. Bayesian statistical methods for genetic association studies. Nature Reviews Genetics, 10(10), pp.681-690. 2. Wakefield, J., 2009. Bayes factors for genome‐wide association studies: comparison with P‐values. Genetic epidemiology, 33(1), pp.79-86. 3. Wen,…