Nikita Alexeev: Estimation of the rate of transpositions and the true evolutionary distance

07/07/2017 @ 14:30-15:00
Retreat Research Talk by Nikita Alexeev
Estimation of the rate of transpositions and the true evolutionary distance
1. Alexeev, N. and Alekseyev, M.A., 2017. Estimation of the true evolutionary distance under the fragile breakage model. BMC Genomics, 18(4), p.356.
2. Alexeev, N., Aidagulov, R. and Alekseyev, M.A., 2015. A computational method for the rate estimation of evolutionary transpositions. arXiv preprint arXiv:1501.07546.
3. Yancopoulos, S., Attie, O. and Friedberg, R., 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics, 21(16), pp.3340-3346.
4. Biller, P., Guéguen, L., Knibbe, C. and Tannier, E., 2016. Breaking good: accounting for fragility of genomic regions in rearrangement distance estimation. Genome biology and evolution, 8(5), pp.1427-1439.
5. Lin, Y. and Moret, B.M., 2008. Estimating true evolutionary distances under the DCJ model. Bioinformatics, 24(13), pp.i114-i122.
6. Erdos, P. and Rényi, A., 1960. On the evolution of random graphs. Publ. Math. Inst. Hung. Acad. Sci, 5(1), pp.17-60.