07/14/2017 @ 14:45-15:30
Research Talk by Cenk Sahinalp
HIT’nDRIVE: Patient-Specific Multi-Driver Gene Prioritization for Precision Oncology 
1. El-Kebir, M., Satas, G., Oesper, L. and Raphael, B.J., 2016. Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures. Cell Systems, 3(1), pp.43-53.
2. El-Kebir, M., Oesper, L., Acheson-Field, H. and Raphael, B.J., 2015. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. Bioinformatics, 31(12), pp.i62-i70.
3. Oesper, L., Satas, G. and Raphael, B.J., 2014. Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data. Bioinformatics, 30(24), pp.3532-3540.
4. Salehi, S., Steif, A., Roth, A., Aparicio, S., Bouchard-Côté, A. and Shah, S.P., 2017. ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data. Genome Biology, 18(1), p.44.
5. Roth, A., McPherson, A., Laks, E., Biele, J., Yap, D., Wan, A., Smith, M.A., Nielsen, C.B., McAlpine, J.N., Aparicio, S. and Bouchard-Côté, A., 2016. Clonal genotype and population structure inference from single-cell tumor sequencing. Nature methods, 13(7), pp.573-576.
6. Ha, G., Roth, A., Khattra, J., Ho, J., Yap, D., Prentice, L.M., Melnyk, N., McPherson, A., Bashashati, A., Laks, E. and Biele, J., 2014. TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data. Genome research, 24(11), pp.1881-1893.
7. Roth, A., Khattra, J., Yap, D., Wan, A., Laks, E., Biele, J., Ha, G., Aparicio, S., Bouchard-Côté, A. and Shah, S.P., 2014. PyClone: statistical inference of clonal population structure in cancer. Nature methods, 11(4), pp.396-398.
8. Jahn, K., Kuipers, J. and Beerenwinkel, N., 2016. Tree inference for single-cell data. Genome biology, 17(1), p.86.
Cenk Sahinalp | HIT’nDRIVE | Patient-Specific Multi-Driver Gene Prioritization for Precision Oncology | CGSI 2017