Ben Raphael| Computational Analysis of Somatic Mutations in Cancer | CGSI 2016

07/20/2016 @ 15:15-16:00
Tutorial by Ben Raphael
Computational Analysis of Somatic Mutations in Cancer
1. Ding, L., Wendl, M.C., McMichael, J.F. and Raphael, B.J., 2014. Expanding the computational toolbox for mining cancer genomes. Nature Reviews Genetics, 15(8), pp.556-570.
2. Raphael, B.J., Dobson, J.R., Oesper, L. and Vandin, F., 2014. Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine. Genome medicine, 6(1), p.5.
3. Vogelstein, B., Papadopoulos, N., Velculescu, V.E., Zhou, S., Diaz, L.A. and Kinzler, K.W., 2013. Cancer genome landscapes. science, 339(6127), pp.1546-1558.
4. Oesper, L., Mahmoody, A. and Raphael, B.J., 2013. THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data. Genome biology, 14(7), p.R80.
5. El-Kebir, M., Oesper, L., Acheson-Field, H. and Raphael, B.J., 2015. Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. Bioinformatics, 31(12), pp.i62-i70.