Rayan Chikhi | Research | Q: Is de novo genome assembly with long reads a solved problem yet? A: No.
Related papers:
P Marijon, R Chikhi, JS Varré, Graph analysis of fragmented long-read bacterial genome assemblies, Bioinformatics (2019)
M Schmid & al, Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats, NAR (2018)
S. Koren & al, Reply to âErrors in long-read assemblies can critically affect protein predictionâ Authors, Nature Biotech (2019)
J. Ruan, H. Li, Fast and accurate long-read assembly with wtdbg2, bioRxiv (2019)
M. Kolmogorov & al, Assembly of long, error-prone reads using repeat graphs. Nat Biotech (2019)