Jason Ernst | Tutorial | Computational approaches for understanding the noncoding human genome.
Related papers:
Ernst J, Kellis M.
Discovery and characterization of chromatin states for systematic annotation of the human genome.
Nature Biotechnology 28: 817-825, 2010.
http://www.nature.com/nbt/journal/v28/n8/abs/nbt.1662.html
Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE.
Mapping and analysis of chromatin state dynamics in nine human cell types.
Nature 473: 43-49, 2011.
http://www.nature.com/nature/journal/v473/n7345/full/nature09906.html
Ernst J, Kellis M.
ChromHMM: automating chromatin-state discovery and characterization.
Nature Methods 9:215-216, 2012.
http://www.nature.com/nmeth/journal/v9/n3/full/nmeth.1906.html
Ernst J, Kellis M.
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues.
Nature Biotechnology 33:364-376, 2015
http://www.nature.com/nbt/journal/v33/n4/full/nbt.3157.html
Ernst J, Melnikov A, Zhang X, Wang L, Rogov P, Mikkelsen T, Kellis.
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.
Nature Biotechnology 34:1180-1190, 2016.
http://www.nature.com/nbt/journal/v34/n11/full/nbt.3678.html