Over the past few decades, technological developments have resulted in the accumulation of large genomic data even within a single experiment. The analysis of this data has led to many novel discoveries and medical applications. For this reason, the majority of the biotechnology and pharmaceutical companies today, as well as many labs in academia, include experts in the analysis of biological data. These experts have domain expertise in subfields of genomics, such as cancer genomics, statistical genetics, protein structure prediction, computational medicine, metagenomics, and others.

The analysis of these datasets requires the development of methods that are domain-specific. Over the years, many communities that are dedicated to specific subfields of genomics have emerged. Unfortunately, this resulted in smaller overlap between the different sub-domains; for example, the statistical genomics community has minimal overlap with the metagenomics community. CGSI was formed in order to bridge this gap; it is a methods-oriented program with the goal to create interactions between the different fields of research in computational genomics -- and more broadly, computational medicine -- in an informal setting.

In order to achieve this goal, we structure CGSI in a very non-typical way, resulting in its own unique culture. Specifically, CGSI is a fusion of a summer school and a scientific conference. It has the characteristics of a conference, bringing together over a hundred researchers and trainees who showcase their latest research. It also has the characteristics of a summer school; it is a month-long program that involves a combination of tutorials (broader talks that include an overview of the field) and research talks, with opportunities for in-depth discussions during breaks. It emphasizes the need for interaction between participants. We offer icebreakers and many social activities, including an opening retreat in the mountains, a picnic at the beach, and sports games that involve both faculty and trainees. We hope you will join the community.

We are very proud of the faculty in the CGSI community. It is clear that everyone who joins CGSI views it as an opportunity to be part of a larger community. The vast majority of the CGSI faculty spends at least a week at CGSI, takes part in the social events, and makes an effort to interact with faculty and trainees from other fields within computational medicine in order to foster a sense of a larger methods-based community. We welcome to our community both new and established researchers who are interested in methods development for genomics and medical applications, and who would like to become part of a larger, friendly, and intellectually stimulating community.

The institute has its roots in a program called "Mathematical and Computational Approaches in High-Throughput Genomics", which was held at UCLA's Institute for Pure and Applied Mathematics (IPAM) in 2011. Many of the current CGSI faculty were part of this program. CGSI was later founded in 2015 by Eleazar Eskin (UCLA), Eran Halperin (UCLA), John Novembre (The University of Chicago), and Ben Raphael (Princeton University) with the goals of improving education and facilitating collaboration in genomics and related fields. In 2023, in response to changes to the research environment, the founders made the decision to add other areas of research to its agenda: specifically, machine learning and AI applied to medical imaging and electronic health records.

CGSI Co-Founders

Eleazar Eskin

Eleazar Eskin

Professor

Head of Computational Medicine Department | UCLA | @ZarEskinCompMed

Eran Halperin

Eran Halperin

Professor

Computer Science & Anesthesiology | UCLA | @eranhalperin

Ben Raphael

Ben Raphael

Professor

Computer Science | Princeton University | @Benjraphael

John Novembre

John Novembre

Professor

Human Genetics, Ecology & Evolution | University of Chicago | @jnovembre

CGSI Organizing Committee

CGSI 2025 program faculty (updated in March)

Ahmed Alaa | UC Berkeley & UCSF

Can Alkan | Bilkent University

Valerie Arboleda | UCLA

Corey Arnold | UCLA

Mohammed Alser | Georgia State University

Brunilda Balliu | UCLA

Vikas Bansal | University of California San Diego

Elias Bareinboim | Columbia University

Lisa Bastarache | Vanderbilt University

Kayhan Batmanghelich | Boston University

Elhanan Borenstein | Tel Aviv University

Brian Browning | University of Washington

Na Cai | Helmholtz Zentrum München

Shai Carmi | The Hebrew University of Jerusalem

Francesco Paolo Casale | Helmholtz Munich

Tim Chang | UCLA

Rayan Chikhi | University of Lille

Ercument Cicek | Bilkent University & Carnegie Mellon University

Nancy Cox | Vanderbilt University

Andy Dahl | University of Chicago

Jessica Dennis | University of British Columbia

Mohammed El-Kebir | University of Illinois, Urbana Champagne

Jason Ernst | UCLA

Nandita Garud | UCLA

Steven Gazal | University of Southern California

Casey Greene | University of Colorado

Ilan Gronau | The Interdisciplinary Center, Herzliya

Gamze Gürsoy Columbia University

Juan Gutiérrez | UT San Antonio

Jaana Hartiala | UCLA

Iman Hajirasouliha | Cornell University

Jo Hardin | Pomona College

Fereydoun Hormozdiari | University of California Davis

Margaux Hujoel | UCLA

Haky (Hae Kyung) Im | University of Chicago

Iuliana Ionita-Laza | Columbia University

Evan Johnson | Rutgers New Jersey Medical School

Vanessa Johnsson | University of California, Santa Cruz

Shalmali Joshi | Columbia University

Aly Khan |University of Chicago

Jaehee Kim | Cornell University

David Knowles | Columbia University

David Koslicki | Pennsylvania State University

Rahul Krishnan | University of Toronto

Smita Krishnaswamy | Yale University

Christina Leslie | Sloan Kettering Institute

Jingyi Jessica Li | UCLA

Qunhua Li | Pennsylvania State University

Wei Li | University of California, Irvine

Christoph Lippert | Hasso Plattner Institute

Cong Ma | U. Michigan Computational Medicine

Jian Ma | Carnegie Mellon University

Nick Mancuso | University of Southern California

Siavash Mirarab |University of California San Diego

Pejman Mohammadi | University of Washington

Hosein Mohimani | UCLA

Erin Molloy | University of Maryland

Jazlyn Mooney | University of Southern California

John Novembre | University of Chicago

Layla Oesper | Carleton College

Loes Olde Loohuis | UCLA

Bogdan Pasaniuc | UCLA

Pavel Pevzner | University of California, San Diego

Teresa Przytycka | National Institutes of Health

Rajesh Ranganath | New York University

Ben Raphael | Princeton University

Saharon Rosset | Tel Aviv University

Sushmita Roy | University of Wisconsin-Madison

Julia Salzman | Stanford University

Kris Sankaran | University of Wisconsin – Madison

Matteo Sesia | University of Southern California

Ron Shamir | Tel Aviv University

Sagiv Shifman | The Hebrew University of Jerusalem

Ritambhara Singh | Brown University

Pavel Skums | University of Connecticut

Sagi Snir | University of Haifa

Paul Spellman | UCLA

Matthew Stephens | University of Chicago

Daniel Tward | UCLA

Ophelia Venturelli | University of Wisconsin-Madison

Peter Visscher | University of Queensland, Australia

Julia Vogt | ETH Zurich

Wei Wang | UCLA

Wenyi Wang | MD Anderson Cancer Center

Tandy Warnow | University of Illinois

Xinzhu “April” Wei | Cornell University

Jennifer Wilson | UCLA

Jason Xu | UCLA

Yuzhe Yang | UCLA

Chongzhi Zang | University of Virginia

Alex Zelikovsky | Georgia State University

Shaojie Zhang | University of Central Florida

James Zou | Stanford University

Or Zuk | The Hebrew University of Jerusalem

CGSI Staff

Samantha andrews

Student Programs Manager

Leticia Ortiz

Marketing Manager

Genevieve Aguirre

Executive Assistant

CGSI Volunteers