Over the past few decades, technological developments have resulted in the accumulation of large genomic data even within a single experiment. The analysis of this data has led to many novel discoveries and medical applications. For this reason, the majority of the biotechnology and pharmaceutical companies today, as well as many labs in academia, include experts in the analysis of biological data. These experts have domain expertise in subfields of genomics, such as cancer genomics, statistical genetics, protein structure prediction, computational medicine, metagenomics, and others.

The analysis of these datasets requires the development of methods that are domain-specific. Over the years, many communities that are dedicated to specific subfields of genomics have emerged. Unfortunately, this resulted in smaller overlap between the different sub-domains; for example, the statistical genomics community has minimal overlap with the metagenomics community. CGSI was formed in order to bridge this gap; it is a methods-oriented program with the goal to create interactions between the different fields of research in computational genomics -- and more broadly, computational medicine -- in an informal setting.

In order to achieve this goal, we structure CGSI in a very non-typical way, resulting in its own unique culture. Specifically, CGSI is a fusion of a summer school and a scientific conference. It has the characteristics of a conference, bringing together over a hundred researchers and trainees who showcase their latest research. It also has the characteristics of a summer school; it is a month-long program that involves a combination of tutorials (broader talks that include an overview of the field) and research talks, with opportunities for in-depth discussions during breaks. It emphasizes the need for interaction between participants. We offer icebreakers and many social activities, including an opening retreat in the mountains, a picnic at the beach, and sports games that involve both faculty and trainees. We hope you will join the community.

We are very proud of the faculty in the CGSI community. It is clear that everyone who joins CGSI views it as an opportunity to be part of a larger community. The vast majority of the CGSI faculty spends at least a week at CGSI, takes part in the social events, and makes an effort to interact with faculty and trainees from other fields within computational medicine in order to foster a sense of a larger methods-based community. We welcome to our community both new and established researchers who are interested in methods development for genomics and medical applications, and who would like to become part of a larger, friendly, and intellectually stimulating community.

The institute has its roots in a program called "Mathematical and Computational Approaches in High-Throughput Genomics", which was held at UCLA's Institute for Pure and Applied Mathematics (IPAM) in 2011. Many of the current CGSI faculty were part of this program. CGSI was later founded in 2015 by Eleazar Eskin (UCLA), Eran Halperin (UCLA), John Novembre (The University of Chicago), and Ben Raphael (Princeton University) with the goals of improving education and facilitating collaboration in genomics and related fields. In 2023, in response to changes to the research environment, the founders made the decision to add other areas of research to its agenda: specifically, machine learning and AI applied to medical imaging and electronic health records.

CGSI Co-Founders

Eleazar Eskin

Eleazar Eskin

Professor

Head of Computational Medicine Department | UCLA | @ZarEskinCompMed

Eran Halperin

Eran Halperin

Professor

Computer Science & Anesthesiology | UCLA | @eranhalperin

Ben Raphael

Ben Raphael

Professor

Computer Science | Princeton University | @Benjraphael

John Novembre

John Novembre

Professor

Human Genetics, Ecology & Evolution | University of Chicago | @jnovembre

CGSI Organizing Committee

CGSI 2025 program faculty (updated in March)

Ahmed Alaa | University of California, Berkeley
Can Alkan | Bilkent University
Mohammed Alser | Georgia State University
Valerie Arboleda | UCLA
Brunilda Balliu | UCLA
Vikas Bansal | UC San Diego
Elias Bareinboim | Columbia University
Kayhan Batmanghelich | Boston University
Gurkan Bebek | Case Western Reserve University
Elhanan Borenstein | Tel Aviv University
Brian Browning | University of Washington
Na Cai | ETH Zurich
Shai Carmi | The Hebrew University of Jerusalem
Francesco Paolo Casale | Helmholtz Munich
Tim Chang | UCLA
Rayan Chikhi | Institut Pasteur
Ercument Cicek | Bilkent University
Andy Dahl | UChicago
Jessica Dennis | University of British Columbia
Mohammed El-Kebir | University of Illinois, Urbana Champagne
Jason Ernst | UCLA
Eleazar Eskin | UCLA
Nandita Garud | UCLA
Steven Gazal | University of Southern California
Amy Goldberg | UCLA
Casey Greene | University of Colorado
Ilan Gronau | Reichman University
Gamze Gürsoy | Columbia University / New York Genome Center
Juan Gutiérrez | University of Texas at San Antonio
Iman Hajirasouliha | Weill Cornell Medicine
Jo Hardin | Pomona College
Jaana Hartiala | UCLA
Fereydoun Hormozdiari | UC Davis
Margaux Hujoel | UCLA
Haky (Hae Kyung) Im | University of Chicago
Iuliana Ionita-Laza | Columbia University
Vanessa Jonsson | UC Santa Cruz
Shalmali Joshi | Columbia University
Aly Khan | University of Chicago
Jaehee Kim | Cornell University
David Knowles | NYGC/Columbia University
David Koslicki | Penn State University
Smita Krishnaswamy | Yale University
Christina Leslie | Memorial Sloan Kettering Cancer Center
Wei Li | University of California, Irvine
Jingyi Jessica Li | Fred Hutchinson Cancer Ctr. / UCLA
Qunhua Li | Pennsylvania State University
Sheng Li | University of Southern California
Christoph Lippert | Hasso Plattner Institute
Cong Ma | University of Michigan
Ying Ma | Brown University
Nick Mancuso | USC
Siavash Mirarab | UCSD
Erin Molloy | University of Maryland, College Park
Jazlyn Mooney | USC
John Novembre | University of Chicago
Layla Oesper | Carleton College
Loes Olde Loohuis | UCLA
Bogdan Pasaniuc | UPenn
Pavel Pevzner | UCSD
Teresa Przytycka | National Institute of Health
Rajesh Ranganath | NYU
Ben Raphael | Princeton University
Saharon Rosset | Tel Aviv University
Sushmita Roy | University of Wisconsin-Madison
Julia Salzman | Stanford University
Kris Sankaran | UW-Madison
Palash Sashittal | Virginia Tech
Matteo Sesia | University of Southern California
Sagiv Shifman | Hebrew University
Ritambhara Singh | Brown University
Pavel Skums | University of Connecticut
Sagi Snir | U Haifa, Israel
Paul Spellman | UCLA
Matthew Stephens | University of Chicago
Daniel Tward | UCLA
Julia Vogt | ETH Zurich
Wei Wang | UCLA
Wenyi Wang | MD Anderson Cancer Center
Tandy Warnow | University of Illinois Urbana-Champaign
Xinzhu “April” Wei | Cornell University
Jason Xu | UCLA
Chongzhi Zang | University of Virginia
Shaojie Zhang | University of Central Florida
Jasmine Zhou | UCLA
Or Zuk | Hebrew University of Jerusalem

CGSI Staff

Samantha andrews

Student Affairs Officer

Leticia Ortiz

Marketing Manager

Genevieve Aguirre

Student Program Manager

CGSI Volunteers