Fereydoun Hormozdiari | Detecting Structural Variation | CGSI 2016

07/20/2016 @ 09:15-10:00
Tutorial by Fereydoun Hormozdiari
Detecting Structural Variation
1. Hormozdiari, F., Alkan, C., Eichler, E.E. and Sahinalp, S.C., 2009. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome research, 19(7), pp.1270-1278.
2. Alkan, C., Coe, B.P. and Eichler, E.E., 2011. Genome structural variation discovery and genotyping. Nature Reviews Genetics, 12(5), pp.363-376.
3. Handsaker, R.E., Korn, J.M., Nemesh, J. and McCarroll, S.A., 2011. Discovery and genotyping of genome structural polymorphism by sequencing on a population scale. Nature genetics, 43(3), pp.269-276.
4. Sindi, S.S., Önal, S., Peng, L.C., Wu, H.T. and Raphael, B.J., 2012. An integrative probabilistic model for identification of structural variation in sequencing data. Genome biology, 13(3), p.R22.
5. Rausch, T., Zichner, T., Schlattl, A., Stütz, A.M., Benes, V. and Korbel, J.O., 2012. DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics, 28(18), pp.i333-i339.
6. Layer, R.M., Chiang, C., Quinlan, A.R. and Hall, I.M., 2014. LUMPY: a probabilistic framework for structural variant discovery. Genome biology, 15(6), p.R84.
7. Chaisson, M.J., Huddleston, J., Dennis, M.Y., Sudmant, P.H., Malig, M., Hormozdiari, F., Antonacci, F., Surti, U., Sandstrom, R., Boitano, M. and Landolin, J.M., 2015. Resolving the complexity of the human genome using single-molecule sequencing. Nature, 517(7536), pp.608-611.