Rayan Chikhi | Research | Q: Is de novo genome assembly with long reads a solved problem yet? A: No.

Related papers:
P Marijon, R Chikhi, JS Varré, Graph analysis of fragmented long-read bacterial genome assemblies, Bioinformatics (2019)

M Schmid & al, Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats, NAR (2018)

S. Koren & al, Reply to ‘Errors in long-read assemblies can critically affect protein prediction’ Authors, Nature Biotech (2019)

J. Ruan, H. Li, Fast and accurate long-read assembly with wtdbg2, bioRxiv (2019)

M. Kolmogorov & al, Assembly of long, error-prone reads using repeat graphs. Nat Biotech (2019)


Jul 17 2019


12:00 pm - 12:45 pm


Mong Auditorium
Mong Auditorium, Engineering VI 404 Westwood Plaza, Los Angeles, CA 90095