2016 Videos and Slides

For a complete list of presentations and relevant publications, please download the UCLA CGSI 2016 Program (PDF).

7/18/16
9:15-10:00
 
Tutorial: An Introduction to Genotype Imputation Brian Browning
7/18/16
10:00-10:45
 
Tutorial: Bayesian Statistics and its Application to Integrative Statistical Genomics William Wen
7/18/16
14:00-14:45
 
Research Talk: Genetic Basis of Complex Traits Leonid Kruglyak
7/18/16
15:15-16:15
 
Research Talk: Interpreting Human Variation in the Personal Genome Era Carlos Bustamante
7/19/16
9:15-10:00
 
Tutorial: Snakemake: Reproducible and Scalable Data Analysis Alexander Schönhuth
7/19/16
10:00-10:45
 
Tutorial: Tutorial on RNASeq Normalization and Differential Expression Jo Hardin
7/19/16
14:00-14:45
 
Tutorial: Genomic Reconstructions of Deep Human History Sohini Ramachandran
7/19/16
15:15-16:00
 
Tutorial: High-Throughput Sequencing Applications to Molecular Epidemiology Alex Zelikovski
7/20/16
9:15-10:00
 
Tutorial: Detecting Structural Variation Fereydoun Hormozdiari
7/20/16
10:00-10:45
 
Research Talk: Deciphering the Non-coding Human Genome Jason Ernst
7/20/16
14:00-14:45
 
Research Talk: Methods to Understand the Polygenic Architecture of Complex Traits Bogdan Pasaniuc
7/20/16
15:15-16:00
 
Tutorial: Computational Analysis of Somatic Mutations in Cancer Ben Raphael
7/20/16
16:15-17:00
 
Research Talk: Quantifying Uncertainties in Big Genome Data Alexander Schönhuth
07/21/16
9:15-10:00
 
Research Talk: Structured Populations in Genetics Jennifer Listgarten
07/21/16
10:00-10:45
 
Tutorial: Bootstrap – The Statistician’s Magic Wand Saharon Rosset
07/21/16
14:00-14:45
 
Research Talk: Variances and Covariances in Recently Admixed Populations Noah Zaitlen
07/21/16
14:45-15:30
 
Research Talk: Genotype Imputation with Millions of Reference Samples Brian Browning
07/21/16
16:00-16:50
 
Research Talk: Integrative Genomics in Neuropsychiatric Diseases Dan Geschwind
07/22/16
9:15-10:00
 
Tutorial: Evolutionary Models in Population Genomics Sriram Sankararaman
7/22/16
10:00-10:45
 
Tutorial: Alignment-free RNASeq Analysis Wei Wang
7/22/16
14:00-14:45
 
Research Talk: NMFP – Identifying mRNA Isoforms from RNASeq Data Jingyi (Jessica) Li
7/22/16
15:15-16:00
 
Research Talk: The Interplay Between Demography and Selection in Dogs, Wolves, and Foxes Kirk Lohmueller
7/25/16
9:30-10:15
 
Tutorial: Applying CS tools to Biological questions: a case study in genome assembly Paul Medvedev
7/25/16
10:45-11:00
 
Mini Presentation: Finding hidden signals in whole-genome epigenetic data Elior Rahmani
7/25/16
11:00-11:15
 
Mini Presentation: Integrative modelling of regulatory and phenotypic variation Lara Urban
7/25/16
11:15-11:30
 
Mini Presentation: Quantifying uncertainty in heritability estimation using linear mixed models Regev Schweiger
7/25/16
13:30-13:45
 
Mini Presentation: Improving bootstrap confidence intervals via Quantile Regression Eyal Fisher
7/25/16
13:45-14:00
 
Mini Presentation: Quantifying replicability in systematic reviews: The r-value Liat Shenhav
7/25/16
14:00-14:15
 
Mini Presentation: A novel annotation of the human genome through conservation states aids interpretation of disease associated genetic variation Adriana Sperlea
07/26/16
9:30-10:15
 
Tutorial: Models and methods for detecting population structure in humans John Novembre
07/26/16
10:15-11:00
 
Research Talk: Mathematical Bounds on Population-Genetic Statistics Noah Rosenberg
07/26/16
11:30-11:45
 
Mini Presentation: Genome-Wide Analysis of the molecular function of eQTLs in regulatory networks Roni Wilentzik
07/26/16
11:45-12:00
 
Mini Presentation: Constructing the tree of life in light of extensive HGT events Eliran Avni
07/26/16
12:00-12:15
 
Mini Presentation: The impact of Neanderthal ancestry on depression in East Asians Christopher Robles
7/27/16
9:30-10:15
 
Tutorial: MM Algorithms Kenneth Lange
7/27/16
10:45-11:00
 
Mini Presentation: Biological information channel Siddharth Jain
7/27/16
11:00-11:15
 
Mini Presentation: Enabling fast read alignment in genome analysis Mohammed Alser
7/27/16
11:15-11:30
 
Mini Presentation: Transcriptome analysis at the gene isoform level using hybrid sequencing Kin Fai Au
7/27/16
12:00-12:15
 
Mini Presentation: Genome analysis and visualization of genomic data Diana Domanska
7/27/16
12:15-12:30
 
Mini Presentation: Detecting mutagenic recombination using genome-wide divergence data Tanya Phung
7/27/16
12:30-12:45
 
Mini Presentation: Understanding the Genetic Basis of Mutation Rate Variation in Yeast Liangke Gou
7/28/16
9:30-10:15
 
Research Talk: Mixed Modeling for Case-Control Genome-Wide Studies: A Major Challenge Saharon Rosset
7/28/16
10:45-11:00
 
Mini Presentation: Using DNA methylation data to understand the evolutionary basis of human aging Chloe Robins
7/28/16
11:00-11:15
 
Mini Presentation: Modeling illumina read pair data for assembly scaffolding and structural variation detection Kristoffer Sahlin
7/28/16
11:15-11:30
 
Mini Presentation: Fine mapping and post-GWAS Era Farhad Hormozdiari
7/28/16
12:00-12:15
 
Mini Presentation: Surveying the complete space of genetic loci influencing protein abundance Olga Schubert
7/28/16
12:15-12:30
 
Mini Presentation: Mathematical methods in metagenomics David Koslicki
7/28/16
12:30-12:45
 
Mini Presentation: The effect of assortative mating on population admixture Jaehee Kim
7/29/16
9:30-10:15
 
Research Talk: The Genetics of Depression Jonathan Flint
7/29/16
10:15-10:30
 
Mini Presentation: Applications of genomic predictions from linear mixed models Joel Mefford
7/29/16
10:30-10:45
 
Mini Presentation: Genome Rearrangements and Reconstruction of Ancestral Genomes Pavel Avdeyev
7/29/16
11:15-11:30
 
Mini Presentation: Dumpster Diving in RNASeq to Find the Source of Every Last Read Serghei Mangul
7/29/16
11:30-11:45
 
Mini Presentation: Deciphering the Polycomb-dependent regulatory networks in gliomagenesis Pasquale Laise
7/29/16
11:45-12:30
 
Research Talk: Elucidating the Complexity of the Mammalian m⁶A Epitranscriptome Yi Xing
8/1/16
9:30-10:15
 
Tutorial: Epigenome Imputation Jason Ernst
8/1/16
10:15-11:00
 
Tutorial: Emilia Huerta-Sanchez Emilia Huerta-Sanchez
8/2/16
10:30-11:15
 
Tutorial: Integrative fine-mapping for causal variants Bogdan Pasaniuc
08/02/16
11:15-12:00
 
Tutorial: Conditioning in association studies Noah Zaitlen
8/3/16
10:30-11:30
 
Tutorial: Tutorial on Reconstructing Evolution from the Tiniest Fractions : Basics, Challenges, and Application Sagi Snir
8/4/16
10:30-11:15
 
Research Talk: Research Talk on Reconstructing Evolution from the Tiniest Fractions : Basics, Challenges, and Application Sagi Snir
08/04/16
11:15-12:15
 
Research Talk: Comparison of the distribution of fitness effects across species using the Poisson Random Field framework Kirk Lohmueller
8/5/16
11:15-12:00
 
Research Talk: Inferring the structure of archaic admixture in modern humans Sriram Sankararaman
08/08/16
9:30-10:30
 
Tutorial: Dimension reduction methods to identify latent structure in genomic data Barbara Engelhardt
8/8/16
10:30-11:30
 
Tutorial: Challenges in Genomic Privacy Sriram Sankararaman
8/9/16
9:30-10:30
 
Research Talk: Exploring covariation in gene expression data Barbara Engelhardt
08/09/16
10:30-11:30
 
Tutorial: Next generation statistical genetics: Modeling, penalization, and optimization in high-dimensional data Kenneth Lange
08/10/16
9:30-10:30
 
Research Talk: Assumptions in Normalizing RNASeq Data Jo Hardin
8/10/16
15:00-16:00
 
Tutorial: Quantitative Trait Locus Detection Jonathan Flint
8/10/16
16:00-17:00
 
External (non-CGSI) Event: UCLA Bioinformatics Lecture: Transcriptome analysis by hybrid sequencing Kin Fai Au
08/11/16
9:30-10:30
 
Tutorial: Bacterial Community Reconstruction via Compressed Sensing David Koslicki
08/11/16
10:30-11:30
 
Tutorial: Functional Genomics Time-series Analysis Jason Ernst
08/12/16
15:00-15:30
 
Research Talk: CGSI 2016 Wrap-Up Eleazar Eskin
8/12/16
10:00-11:00
 
Research Talk: Linear Mixed Models – And Their Equivalents Joel Mefford