08/02/2016 @ 11:15-12:00 Tutorial by Noah Zaitlen Conditioning in Association Studies 1. Zaitlen, N., Lindström, S., Pasaniuc, B., Cornelis, M., Genovese, G., Pollack, S., Barton, A., Bickeböller, H., Bowden, D.W., Eyre, S. and Freedman, B.I., 2012. Informed conditioning on clinical covariates increases power in case-control association studies. PLoS Genet, 8(11), p.e1003032. 2. Aschard, H., Vilhjalmsson,…
08/02/2016 @ 10:30-11:15 Tutorial by Bogdan Pasaniuc Integrative Fine-mapping for Causal Variants 1. Kichaev, G. and Pasaniuc, B., 2015. Leveraging functional-annotation data in trans-ethnic fine-mapping studies. The American Journal of Human Genetics, 97(2), pp.260-271. 2. Kichaev, G., Yang, W.Y., Lindstrom, S., Hormozdiari, F., Eskin, E., Price, A.L., Kraft, P. and Pasaniuc, B., 2014. Integrating functional…
08/01/2016 @ 10:15-11:00 Tutorial by Emilia Huerta-Sanchez Evolutionary Adaptation in Humans 1. Nielsen, R., 2005. Molecular signatures of natural selection. Annu. Rev. Genet., 39, pp.197-218. 2. Vitti, J.J., Grossman, S.R. and Sabeti, P.C., 2013. Detecting natural selection in genomic data. Annual review of genetics, 47, pp.97-120. 3. Racimo, F., Sankararaman, S., Nielsen, R. and Huerta-Sánchez,…
08/01/2016 @ 09:30-10:15 Tutorial by Jason Ernst Epigenome Imputation 1. Ernst, J. and Kellis, M., 2015. Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues. Nature biotechnology, 33(4), pp.364-376. 2. Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., Ziller, M.J. and Amin,…
07/27/2016 @ 09:30-10:15 Tutorial by Kenneth Lange MM Algorithms 1. Hunter, D.R. and Lange, K., 2004. A tutorial on MM algorithms. The American Statistician, 58(1), pp.30-37.
We apologize that this video is not currently available. 07/26/2016 @ 09:30-10:15 Tutorial by John Novembre Models and Methods for Detecting Population Structure in Humans 1. Schraiber, J.G. and Akey, J.M., 2015. Methods and models for unravelling human evolutionary history. Nature Reviews Genetics.
We apologize that this video is not currently available. 07/25/2016 @ 09:30-10:15 Tutorial by Paul Medvedev Applying CS Tools to Biological Questions: A Case Study in Genome Assembly 1. Medvedev, P. and Brudno, M., 2009. Maximum likelihood genome assembly. Journal of computational Biology, 16(8), pp.1101-1116.
07/22/16 @ 10:00-10:45 Tutorial by Wei Wang Alignment-free RNASeq Analysis 1. Zhang, Z. and Wang, W., 2014. RNA-Skim: a rapid method for RNA-Seq quantification at transcript level. Bioinformatics, 30(12), pp.i283-i292.
07/22/2016 @ 09:15-10:00 Tutorial by Sriram Sankararaman Evolutionary Models in Population Genomics 1. Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P.H., De Filippo, C. and Li, H., 2014. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature, 505(7481), pp.43-49. 2. Sankararaman, S.,…
07/21/2016 @ 10:00-10:45 Tutorial by Saharon Rosset Bootstrap – The Statistician’s Magic Wand 1. Efron, B. and Tibshirani, R.J., 1994. An introduction to the bootstrap. CRC press. 2. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, pp.783-791. 3. Efron, B., Halloran, E. and Holmes, S., 1996. Bootstrap confidence levels for…