Can Alkan: Next-generation sequence characterization of complex genome structural variation

07/11/2017 @ 12:00-12:45
Research Talk by Can Alkan
Next-generation sequence characterization of complex genome structural variation
1. Alkan, C., Coe, B.P. and Eichler, E.E., 2011. Genome structural variation discovery and genotyping. Nature Reviews Genetics, 12(5), pp.363-376.
2. Alkan, C., Kidd, J.M., Marques-Bonet, T., Aksay, G., Antonacci, F., Hormozdiari, F., Kitzman, J.O., Baker, C., Malig, M., Mutlu, O. and Sahinalp, S.C., 2009. Personalized copy number and segmental duplication maps using next-generation sequencing. Nature genetics, 41(10), pp.1061-1067.
3. Hormozdiari, F., Alkan, C., Eichler, E.E. and Sahinalp, S.C., 2009. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome research, 19(7), pp.1270-1278.
4. Chiatante, G., Miroballo, M., Tang, J., Ventura, M., Amemiya, C.T., Eichler, E.E., Antonacci, F. and Alkan, C., 2017. Discovery of large genomic inversions using long range information. BMC genomics, 18(1), pp.65-65.
5. Layer, R.M., Chiang, C., Quinlan, A.R. and Hall, I.M., 2014. LUMPY: a probabilistic framework for structural variant discovery. Genome biology, 15(6), p.R84.