CGSI 2023
- Alkan, Can | Characterization of Genomic Structural Variation Using Various Sequencing Technologies Alkan, Can Characterization of Genomic Structural Variation Using Various Sequencing Technologies
- Arboleda, Valerie | Biobanks from a Pathologist’s Viewpoint
- Bastarache, Lisa | From Population to Person How to Help a Single, Actual Person with Data Science
- Bastarache, Lisa | Fun with Phecodes!
- Batmanghelich, Kayhan | Divide and Conquer: Carving Out Symbolic Models out of BlackBox for More Efficient Domain Adaptation
- Batmanghelich, Kayhan | Understanding Spurious Feature Learning Through the Lens of Task Difficulty
- Cai, Na | Polygenic Means To Test And Refine Depression Disease Models
- Casale, Francesco Paolo | Computational Analysis of Liver Whole slide Images Empowers Genomic Analyses of Historical Traits
- Casale, Francesco Paolo | Mixed Models in Genomic Analyses and Imaging Studies
- Chaisson, Mark | Design, Construction, and Usage of the Draft Pangenome
- Chaisson, Mark | Genotyping Allele specific Copy Number Variants Using Pangenomes
- Chen, Irene | Fairness and Equity in Machine Learning for Healthcare
- Chiang, Jeffrey | Strategies for Integrating Deep Learning with Current Biomedical Research
- Chikhi, Rayan | Living in the Future of Genomics
- Chikhi, Rayan | mDBG and Alignment The Tumultuous Fate of Sequence Bioinformatics Ideas
- Chopra, Sumit | Less is More Learning Signals to Learn Representations in Healthcare
- Cox, Nancy | Ways to Find Confounding in Biobanks
- Cox, Nancy | Confounding sneaks into biobanks in myriad ways…
- El-Kebir, Mohammed | Inferring Parsimonious Migration Histories for Metastatic Cancers
- Ernst, Jason | Leveraging High-throughput Functional Characterization Data to Dissect and Annotate Human Regulatory Regions
- Ernst, Jason | Computational Methods for Modeling and Analyzing Epigenomic Data
- Eskin, Eleazar | SwabSeq Sequencing based Detection of Pathogens
- Garud, Nandita | Detection of Hard and Soft Sweeps from Population Genomic Data
- Gazal, Steven | The Functional Architectures of Human Diseases and Complex Traits: From Polygenicity to Variant Function
- Gravel, Simon | Population Genetics in Large Genealogies
- Greene, Casey | Why is this so hard It should be easy
- Gronau, Ilan | Generating Realistic Chromosome Scale Simulations for Population Genomics Studies
- Gymrek, Melissa | Dissecting the Contribution of the Repeat ome to Complex Traits
- Hajirasouliha, Iman | Applications of Deep Learning in Digital Pathology and Embryology
- Hardin, Jo | Selecting Between-sample ChIP-Seq Normalization Methods From The Perspective of Their Assumptions
- Im, Haky (Hae Kyung) | Predicting the Epigenome from DNA Sequence, Are you there yet
- Khan, Aly Azeem | Computational Insights into Cancer Immunology
- Krishnan, Rahul | Reliable Machine Learning in Healthcare
- Krishnaswamy, Smita | Machine Learning via Graph Signal for Complex Biological Data
- Krishnaswamy, Smita | Graph and Algebraic Signal Processing Basics for Computational Biology
- Lange, Kenneth | MM Principle of Optimization
- Leslie, Christina | Machine Learning Models for Single Cell and Regulatory Genomics
- Li, Wei | Computational Biomedicine Epigenetics Liquid Biopsy and Alternative Polyadenylation Therapy
- Lippert, Christoph | Performing GWAS of Images by Combining Deep Transfer Learning with Statistical Testing
- Lippert, Christoph | Recent Advances in Normalizing Flows
- Lonardi, Stefano | How to “Squeeze” the Best Genome Assembly From Your HiFi Reads
- Loohuis, Loes Olde | Combining Biobanks and Cohort Studies. The Best of Both Worlds
- Ma, Jian | Large Language Models for Computational Biology A Primer
- Mancuso, Nicholas | Computationally Scalable Approaches for Characterizing Genetic Architectures in Diverse Ancestries
- Moore, Jason | Automated Quantitative Trait Locus Analysis
- Oesper, Layla | Tumor Evolution: Methods for Comparing, Summarizing and Visualizing Clonal Trees
- Palacios, Julia | Inference from Single Cell Lineage Tracing Data Generated via Genome Editing
- Przytycka, Teresa | From Mutagenic Processes to Mutational Signatures and Back
- Ranganath, Rajesh | Revisiting Out of Distribution Generalization
- Ranganath, Rajesh | Deep Generative Models in Medicine
- Rosset, Saharon | Intuition and Paradoxes in Probability and Statistics
- Rosset, Saharon | Multiple Testing: Methods for Low- and High-Dimensional Testing Problems in Biomed, and Some Optimality Results
- Salzman, Julia | Statistical Reference free Genomics Solves Myriad Problems in Bioinformatics
- Sankaran, Kris | Selective Inference for Computational Genomics
- Shamir, Ron | Methods for Disease Analysis Using Multiomic Data
- Singh, Ritambhara | Single cell Data Integration Using Optimal Transport
- Snir, Sagi | Harnessing Genome Dynamics for Phylogenetic Reconstruction
- Tward, Daniel Familywise Error Rate Control for Statistical Testing in Brain Image Ontologies
- Wang, Wenyi | Statistical Methods for Cancer Risk Prediction Models
- Warnow, Tandy | Advances in Large scale Multiple Sequence Alignment
- Xie, Pengtao | Training Highly Generalizable Biomedical Image Segmentation Models with Very Few Annotations
- Zang, Chongzhi | BART A Transcriptional Regulator Prediction Method for Functional Genomics
- Zou, James | Modeling Spatial Omics and Cellular Niches with Graph Neural Networks
- Zuk, Or | Independence Tests and Dependence Measures, for Unbiased and Biased Samples